Transcript: lnc-DGCR6-2:27

Basic information

LNCipedia transcript ID: lnc-DGCR6-2:27 
LNCipedia gene ID: lnc-DGCR6-2
Location (hg19): chr22:18840389-18842446
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 359 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013
Alternative transcript names: ENST00000416498.1; AC008103.5-003; OTTHUMT00000316714.1; NONHSAT147199; FPKM1_group_20277_transcript_1
Alternative gene names: ENSG00000161103.6; AC008103.5; OTTHUMG00000150177.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.3178 non-coding 
CPAT coding probability 19.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DGCR6-2:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC008132.13.1-1:3
4.0 lnc-AC008132.13.1-2:10
4.1 lnc-AC008132.13.1-2:10
5.0 lnc-AC008132.13.1-2:10
5.1 lnc-SERPIND1-46:3
5.2 lnc-DGCR6-2:27