Transcript: lnc-DGCR6-6:22

Basic information

LNCipedia transcript ID: lnc-DGCR6-6:22 
LNCipedia gene ID: lnc-DGCR6-6
Location (hg19): chr22:18979510-18980156
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 647 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000537283.1; DGCR5-202; NONHSAT083321
Alternative gene names: ENSG00000237517.3; DGCR5; OTTHUMG00000149977.3; ENSG00000237517.4; NCRNA00037; LINC00037


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 60.0555 non-coding 
CPAT coding probability 63.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DGCR6-6:22 no no no no

Available literature

  1. Ni (2018), Role of DiGeorge syndrome critical region gene 9, a long noncoding RNA, in gastric cancer., Onco Targets Ther
  2. Huang (2016), Down-Regulation of LncRNA DGCR5 Correlates with Poor Prognosis in Hepatocellular Carcinoma., Cell. Physiol. Biochem.
  3. Gong (1996), A transcription map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11., Hum. Mol. Genet.
  4. Sutherland (1996), Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DGCR6-2:5
4.0 DGCR5:15
4.1 DGCR5:15
5.0 DGCR5:15
5.1 lnc-SERPIND1-41:22
5.2 lnc-DGCR6-6:22