Transcript: lnc-DGCR6-6:31

Basic information

LNCipedia transcript ID: lnc-DGCR6-6:31 
HGNC Gene Symbol: lnc-DGCR6-6    
HGNC Full Gene Name: DiGeorge syndrome critical region gene 10
Ensembl Gene ID: ENSG00000273164
Ensembl Transcript ID: ENST00000609839
Location (hg19): chr22:19010569-19011063
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 495 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609839.1
Alternative gene names: ENSG00000273164.1; DGCR10; AC000095.11; NCRNA00037; LINC00037


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.4696 non-coding 
CPAT coding probability 4.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DGCR6-6:31 no no no no

Available literature

  1. Ni (2018), Role of DiGeorge syndrome critical region gene 9, a long noncoding RNA, in gastric cancer., Onco Targets Ther
  2. Huang (2016), Down-Regulation of LncRNA DGCR5 Correlates with Poor Prognosis in Hepatocellular Carcinoma., Cell. Physiol. Biochem.
  3. Gong (1996), A transcription map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11., Hum. Mol. Genet.
  4. Sutherland (1996), Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSSK2-7:3
4.0 lnc-TSSK2-7:3
4.1 DGCR5:32
5.0 DGCR5:32
5.1 lnc-SERPIND1-41:31
5.2 lnc-DGCR6-6:31