Transcript: lnc-DHX38-40:2

Basic information

LNCipedia transcript ID: lnc-DHX38-40:2 
LNCipedia gene ID: lnc-DHX38-40
Location (hg19): chr16:73094144-73094658
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 515 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000606272.1
Alternative gene names: ENSG00000272250.1; RP11-346C20.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.9943 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DHX38-40:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-44L9.1.1-12:2
4.0 lnc-RP11-44L9.1.1-12:2
4.1 lnc-RP11-44L9.1.1-12:2
5.0 lnc-RP11-44L9.1.1-12:2
5.1 lnc-MARVELD3-40:2
5.2 lnc-DHX38-40:2