Transcript: lnc-DHX57-1:1

Basic information

LNCipedia transcript ID: lnc-DHX57-1:1 
LNCipedia gene ID: lnc-DHX57-1
Location (hg19): chr2:39010342-39012094
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1016 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00004213
Alternative gene names: XLOC_002055; linc-SRSF7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.9813 non-coding 
CPAT coding probability 2.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DHX57-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHX57-1:1
3.1 lnc-DHX57-1:1
4.0 lnc-DHX57-1:1
4.1 lnc-DHX57-1:1
5.0 lnc-DHX57-1:1
5.1 lnc-MAP4K3-18:1
5.2 lnc-DHX57-1:1