Transcript: lnc-DIO2-5:2

Basic information

LNCipedia transcript ID: lnc-DIO2-5:2 
LNCipedia gene ID: lnc-DIO2-5
Ensembl Gene ID: ENSG00000258829
Ensembl Transcript ID: ENST00000553348
Location (hg19): chr14:79538475-79541105
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 559 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553348.1; CTD-2243E23.1-002; OTTHUMT00000413836.1; NONHSAT038019
Alternative gene names: ENSG00000258829.1; CTD-2243E23.1; OTTHUMG00000171516.1; AC026888.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.8542 non-coding 
CPAT coding probability 5.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DIO2-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DIO2-5:2
4.0 lnc-DIO2-5:2
4.1 lnc-DIO2-5:2
5.0 lnc-DIO2-5:2
5.1 lnc-PROX2-61:2
5.2 lnc-DIO2-5:2