Transcript: lnc-DLC1-5:1

Basic information

LNCipedia transcript ID: lnc-DLC1-5:1 
LNCipedia gene ID: lnc-DLC1-5
Ensembl Gene ID: ENSG00000254753
Ensembl Transcript ID: ENST00000525673
Location (hg19): chr8:13701610-13706618
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 589 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525673; ENST00000525673.1; RP11-480O10.1-001; OTTHUMT00000384428.1; NONHSAT125215
Alternative gene names: ENSG00000254753; RP11-480O10.1; ENSG00000254753.1; OTTHUMG00000165488.1; AC022690.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.6828 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DLC1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SGCZ-1:1
3.1 lnc-SGCZ-1:1
4.0 lnc-SGCZ-1:1
4.1 lnc-SGCZ-1:1
5.0 lnc-SGCZ-1:1
5.1 lnc-PINX1-75:1
5.2 lnc-DLC1-5:1