Transcript: lnc-DMAC1-4:2

Basic information

LNCipedia transcript ID: lnc-DMAC1-4:2 
LNCipedia gene ID: lnc-DMAC1-4
Ensembl Gene ID: ENSG00000231902
Ensembl Transcript ID: ENST00000435444
Location (hg19): chr9:7960413-7961080
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 501 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015792; ENST00000435444; ENST00000435444.1; RP11-29B9.2-001; OTTHUMT00000106442.1
Alternative gene names: XLOC_007643; linc-C9orf123-1; ENSG00000231902; RP11-29B9.2; ENSG00000231902.1; OTTHUMG00000046176.1; AL135923.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.2239 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMAC1-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf123-4:1
3.1 lnc-C9orf123-4:1
4.0 lnc-C9orf123-4:1
4.1 lnc-C9orf123-4:1
5.0 lnc-C9orf123-4:1
5.1 lnc-CER1-27:2
5.2 lnc-DMAC1-4:2