Transcript: lnc-DMRTA1-4:1

Basic information

LNCipedia transcript ID: lnc-DMRTA1-4:1 
LNCipedia gene ID: lnc-DMRTA1-4
Location (hg19): chr9:23829671-23849912
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1427 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00015656; ENST00000423440; ENST00000423440.1; RP11-321L2.1-001; OTTHUMT00000051950.1
Alternative gene names: XLOC_007301; linc-IFT74-6; ENSG00000231460; RP11-321L2.1; ENSG00000231460.1; OTTHUMG00000019702.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.1441 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMRTA1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMRTA1-2:1
3.1 lnc-DMRTA1-4:1
4.0 lnc-DMRTA1-4:1
4.1 lnc-DMRTA1-4:1
5.0 lnc-DMRTA1-4:1
5.1 lnc-RECK-116:2
5.2 lnc-DMRTA1-4:1