Transcript: lnc-DMRTA1-5:2

Basic information

LNCipedia transcript ID: lnc-DMRTA1-5:2 
LNCipedia gene ID: lnc-DMRTA1-5
Location (hg19): chr9:23945969-23947021
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 679 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016543; NONHSAT130485
Alternative gene names: XLOC_007302; linc-IFT74-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.4468 non-coding 
CPAT coding probability 5.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMRTA1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMRTA1-3:2
3.1 lnc-DMRTA1-5:2
4.0 lnc-DMRTA1-5:2
4.1 lnc-DMRTA1-5:2
5.0 lnc-DMRTA1-5:2
5.1 lnc-RECK-115:3
5.2 lnc-DMRTA1-5:2