Transcript: lnc-DMRTA2-1:19

Basic information

LNCipedia transcript ID: lnc-DMRTA2-1:19 
LNCipedia gene ID: lnc-DMRTA2-1
Location (hg19): chr1:50719577-50723876
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 240 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00002380
Alternative gene names: XLOC_000830; linc-AGBL4-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.3485 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMRTA2-1:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMRTA2-3:2
3.1 lnc-DMRTA2-3:2
4.0 lnc-DMRTA2-3:2
4.1 lnc-DMRTA2-3:2
5.0 lnc-DMRTA2-3:2
5.1 lnc-DMRTA2-1:15
5.2 lnc-DMRTA2-1:19