Transcript: lnc-DNAAF5-1:16

Basic information

LNCipedia transcript ID: lnc-DNAAF5-1:16 
LNCipedia gene ID: lnc-DNAAF5-1
RefSeq ID: NR_110055
Location (hg19): chr7:643035-648139
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 857 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110055; NR_110055.1
Alternative gene names: LOC101926963


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.2187 non-coding 
CPAT coding probability 38.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DNAAF5-1:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HEATR2-1:3
4.0 lnc-HEATR2-1:3
4.1 lnc-HEATR2-1:3
5.0 lnc-HEATR2-1:3
5.1 lnc-GPER1-24:21
5.2 lnc-DNAAF5-1:16