Transcript: lnc-DNAJB13-1:2

Basic information

LNCipedia transcript ID: lnc-DNAJB13-1:2 
LNCipedia gene ID: lnc-DNAJB13-1
Location (hg19): chr11:73639578-73641417
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 383 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000535936; ENST00000535936.1; RP11-707G14.7-001; OTTHUMT00000397899.2; NONHSAT022865
Alternative gene names: ENSG00000256360; RP11-707G14.7; ENSG00000256360.1; OTTHUMG00000168064.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.6594 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAJB13-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAAF1-1:1
3.1 lnc-PAAF1-1:1
4.0 lnc-PAAF1-1:1
4.1 lnc-PAAF1-1:1
5.0 lnc-PAAF1-1:1
5.1 lnc-TCIRG1-134:1
5.2 lnc-DNAJB13-1:2