Transcript: lnc-DNAJC19-2:4

Basic information

LNCipedia transcript ID: lnc-DNAJC19-2:4 
LNCipedia gene ID: lnc-DNAJC19-2
Ensembl Gene ID: ENSG00000241231
Ensembl Transcript ID: ENST00000460993
Location (hg19): chr3:181138846-181160274
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 865 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005897; ENST00000460993; ENST00000460993.1; RP11-275H4.1-001; OTTHUMT00000350436.1; NONHSAT093478
Alternative gene names: XLOC_003343; linc-DNAJC19-6; ENSG00000241231; RP11-275H4.1; ENSG00000241231.1; OTTHUMG00000158223.1; AC022294.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150 non-coding 
CPAT coding probability 6.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNAJC19-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DNAJC19-2:4
3.1 lnc-DNAJC19-2:4
4.0 lnc-DNAJC19-2:4
4.1 lnc-DNAJC19-2:4
5.0 lnc-DNAJC19-2:4
5.1 lnc-CCDC39-6:4
5.2 lnc-DNAJC19-2:4