Transcript: lnc-DNPH1-1:3

Basic information

LNCipedia transcript ID: lnc-DNPH1-1:3 
LNCipedia gene ID: lnc-DNPH1-1
Ensembl Gene ID: ENSG00000245261
Ensembl Transcript ID: ENST00000500590
Location (hg19): chr6:43181539-43191598
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 980 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500590.1; RP3-330M21.5-001; OTTHUMT00000358325.1; NONHSAT112877
Alternative gene names: ENSG00000245261.1; RP3-330M21.5; OTTHUMG00000159928.1; AL133375.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.7743 non-coding 
CPAT coding probability 18.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNPH1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C6orf108-1:1
4.0 lnc-C6orf108-1:1
4.1 lnc-C6orf108-1:1
5.0 lnc-C6orf108-1:1
5.1 lnc-NFKBIE-26:3
5.2 lnc-DNPH1-1:3