Transcript: lnc-DOCK8-2:2

Basic information

LNCipedia transcript ID: lnc-DOCK8-2:2 
LNCipedia gene ID: lnc-DOCK8-2
Ensembl Gene ID: ENSG00000226403
Ensembl Transcript ID: ENST00000444793
Location (hg19): chr9:547318-549531
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 449 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444793.1; RP11-31F19.1-002; OTTHUMT00000051481.1
Alternative gene names: ENSG00000226403.1; RP11-31F19.1; OTTHUMG00000019431.1; AL392089.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -254.7619 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DOCK8-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DOCK8-2:2
4.0 lnc-DOCK8-2:2
4.1 lnc-DOCK8-2:2
5.0 lnc-DOCK8-2:2
5.1 lnc-RECK-314:5
5.2 lnc-DOCK8-2:2