Transcript: lnc-DPEP2NB-1:1

Basic information

LNCipedia transcript ID: lnc-DPEP2NB-1:1 
LNCipedia gene ID: lnc-DPEP2NB-1
Location (hg19): chr16:68047339-68049814
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1185 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000574912.1; CTC-479C5.6-001; OTTHUMT00000437034.1; NONHSAT143209
Alternative gene names: ENSG00000263201.1; CTC-479C5.6; OTTHUMG00000177460.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.474 non-coding 
CPAT coding probability 60.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DPEP2NB-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDX28-1:1
4.0 lnc-DDX28-1:1
4.1 lnc-DDX28-1:1
5.0 lnc-DDX28-1:1
5.1 lnc-SLC12A4-2:1
5.2 lnc-DPEP2NB-1:1