Transcript: lnc-DTHD1-5:1

Basic information

LNCipedia transcript ID: lnc-DTHD1-5:1 
LNCipedia gene ID: lnc-DTHD1-5
Ensembl Gene ID: ENSG00000250723
Ensembl Transcript ID: ENST00000504795
Location (hg19): chr4:33852213-33893771
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504795.1; RP11-79E3.2-003; OTTHUMT00000360334.1; NONHSAT095967; FPKM1_group_23176_transcript_1; ENST00000504795.5
Alternative gene names: ENSG00000250723.1; RP11-79E3.2; OTTHUMG00000160349.1; ENSG00000250723.5; AC016687.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTHD1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DTHD1-5:1
4.0 lnc-DTHD1-5:1
4.1 lnc-DTHD1-5:1
5.0 lnc-DTHD1-5:1
5.1 lnc-GABRB1-102:1
5.2 lnc-DTHD1-5:1