Transcript: lnc-DTHD1-5:3

Basic information

LNCipedia transcript ID: lnc-DTHD1-5:3 
LNCipedia gene ID: lnc-DTHD1-5
Ensembl Gene ID: ENSG00000250723
Ensembl Transcript ID: ENST00000506650
Location (hg19): chr4:33883320-33981429
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506650.1; RP11-79E3.2-004; OTTHUMT00000360335.1; NONHSAT095969
Alternative gene names: ENSG00000250723.1; RP11-79E3.2; OTTHUMG00000160349.1; ENSG00000250723.5; AC016687.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.73 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTHD1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DTHD1-5:3
4.0 lnc-DTHD1-5:3
4.1 lnc-DTHD1-5:3
5.0 lnc-DTHD1-5:3
5.1 lnc-GABRB1-102:3
5.2 lnc-DTHD1-5:3