Transcript: lnc-DTL-2:1

Basic information

LNCipedia transcript ID: lnc-DTL-2:1 
LNCipedia gene ID: lnc-DTL-2
Ensembl Gene ID: ENSG00000229258
Ensembl Transcript ID: ENST00000457272
Location (hg19): chr1:212003188-212019783
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 706 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457272.1; RP11-552D8.1-001; OTTHUMT00000090157.1; NONHSAT009331; ENST00000457272.5
Alternative gene names: ENSG00000229258.1; RP11-552D8.1; OTTHUMG00000037122.1; ENSG00000229258.5; AL445488.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.3978 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTL-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DTL-2:1
4.0 lnc-DTL-2:1
4.1 lnc-DTL-2:1
5.0 lnc-DTL-2:1
5.1 lnc-DTL-8:2
5.2 lnc-DTL-2:1