Transcript: lnc-DTWD2-1:1

Basic information

LNCipedia transcript ID: lnc-DTWD2-1:1 
LNCipedia gene ID: lnc-DTWD2-1
Ensembl Gene ID: ENSG00000249494
Ensembl Transcript ID: ENST00000504820
RefSeq ID: NR_134250
Location (hg19): chr5:118347498-118406585
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 525 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000504820.1; CTB-161M19.4-002; OTTHUMT00000371175.1; NONHSAT103413; NR_134250.1
Alternative gene names: ENSG00000249494.1; CTB-161M19.4; OTTHUMG00000162961.1; ENSG00000249494.5; AC008629.1; LOC105379143


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.2121 non-coding 
CPAT coding probability 4.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTWD2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DTWD2-1:1
4.0 lnc-DTWD2-1:1
4.1 lnc-DTWD2-1:1
5.0 lnc-DTWD2-1:1
5.1 lnc-LOX-43:2
5.2 lnc-DTWD2-1:1