Transcript: lnc-DTWD2-1:3

Basic information

LNCipedia transcript ID: lnc-DTWD2-1:3 
LNCipedia gene ID: lnc-DTWD2-1
Ensembl Gene ID: ENSG00000249494
Ensembl Transcript ID: ENST00000506486
Location (hg19): chr5:118342042-118373363
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 812 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506486.1; CTB-161M19.4-001; OTTHUMT00000371174.1; NONHSAT147362; ENST00000506486.5
Alternative gene names: ENSG00000249494.1; CTB-161M19.4; OTTHUMG00000162961.1; ENSG00000249494.5; AC008629.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.2121 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTWD2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DTWD2-1:3
4.0 lnc-DTWD2-1:3
4.1 lnc-DTWD2-1:3
5.0 lnc-DTWD2-1:3
5.1 lnc-LOX-43:9
5.2 lnc-DTWD2-1:3