Transcript: lnc-DUSP22-5:1

Basic information

LNCipedia transcript ID: lnc-DUSP22-5:1 
LNCipedia gene ID: lnc-DUSP22-5
Location (hg19): chr6:155135-156639
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 751 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011249; ENST00000458006; ENST00000458006.1; RP3-416J7.3-001; OTTHUMT00000039619.1; NONHSAT105970
Alternative gene names: XLOC_005116; linc-DUSP22-4; ENSG00000234823; RP3-416J7.3; ENSG00000234823.1; OTTHUMG00000014111.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.2984 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DUSP22-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL035696.1-4:1
3.1 lnc-AL035696.1-5:1
4.0 lnc-AL035696.1-5:1
4.1 lnc-AL035696.1-5:1
5.0 lnc-AL035696.1-5:1
5.1 lnc-RIPK1-153:1
5.2 lnc-DUSP22-5:1