Transcript: lnc-EBF3-1:1

Basic information

LNCipedia transcript ID: lnc-EBF3-1:1 
LNCipedia gene ID: lnc-EBF3-1
Location (hg19): chr10:131498980-131499526
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 317 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000428178.1; RP11-109A6.2-001; OTTHUMT00000051012.1; NONHSAT017004
Alternative gene names: ENSG00000237224.1; RP11-109A6.2; OTTHUMG00000019262.1; ENSG00000237224.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.7163 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EBF3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EBF3-1:1
4.0 lnc-EBF3-1:1
4.1 lnc-EBF3-1:1
5.0 lnc-EBF3-1:1
5.1 lnc-ADAM12-25:4
5.2 lnc-EBF3-1:1