Transcript: lnc-EBF3-1:2

Basic information

LNCipedia transcript ID: lnc-EBF3-1:2 
LNCipedia gene ID: lnc-EBF3-1
Location (hg19): chr10:131499151-131499821
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 671 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT017005; ENST00000598332.1
Alternative gene names: ENSG00000237224.2; RP11-109A6.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.3895 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EBF3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EBF3-1:2
4.0 lnc-EBF3-1:2
4.1 lnc-EBF3-1:2
5.0 lnc-EBF3-1:2
5.1 lnc-ADAM12-25:2
5.2 lnc-EBF3-1:2