Transcript: lnc-ECD-2:2

Basic information

LNCipedia transcript ID: lnc-ECD-2:2 
LNCipedia gene ID: lnc-ECD-2
Ensembl Gene ID: ENSG00000272599
Ensembl Transcript ID: ENST00000608444
Location (hg19): chr10:74884331-74885163
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 833 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608444.1
Alternative gene names: ENSG00000272599.1; RP11-152N13.16; ENSG00000272599.2; AC016394.1; AC016394.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.1022 non-coding 
CPAT coding probability 4.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ECD-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ECD-2:2
4.0 lnc-ECD-2:2
4.1 lnc-ECD-2:2
5.0 lnc-ECD-2:2
5.1 lnc-VSIR-19:3
5.2 lnc-ECD-2:2