Transcript: lnc-ECHDC1-1:1

Basic information

LNCipedia transcript ID: lnc-ECHDC1-1:1 
LNCipedia gene ID: lnc-ECHDC1-1
Location (hg19): chr6:126698801-127440994
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3574 bp
Exons: 10
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000535629; NONHSAT114827
Alternative gene names: ENSG00000248650; AL356534.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.1788 non-coding 
CPAT coding probability 4.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ECHDC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ECHDC1-1:1
3.1 lnc-ECHDC1-1:1
4.0 lnc-ECHDC1-1:1
4.1 lnc-ECHDC1-1:1
5.0 lnc-ECHDC1-1:1
5.1 lnc-HDDC2-17:1
5.2 lnc-ECHDC1-1:1