Transcript: lnc-ECHDC3-11:2

Basic information

LNCipedia transcript ID: lnc-ECHDC3-11:2 
LNCipedia gene ID: lnc-ECHDC3-11
Ensembl Gene ID: ENSG00000231496
Ensembl Transcript ID: ENST00000420825
Location (hg19): chr10:11002114-11012779
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 537 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017788; ENST00000420825; ENST00000420825.1; RP1-251M9.2-001; OTTHUMT00000046749.1; NONHSAT011392
Alternative gene names: XLOC_008390; linc-CELF2-1; ENSG00000231496; RP1-251M9.2; ENSG00000231496.1; OTTHUMG00000017662.1; AL136369.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -257.2856 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ECHDC3-11:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CELF2-1:1
3.1 lnc-CELF2-1:1
4.0 lnc-CELF2-1:1
4.1 lnc-CELF2-1:1
5.0 lnc-CELF2-1:1
5.1 lnc-NPY4R2-402:2
5.2 lnc-ECHDC3-11:2