Transcript: lnc-ECHDC3-6:1

Basic information

LNCipedia transcript ID: lnc-ECHDC3-6:1 
LNCipedia gene ID: lnc-ECHDC3-6
Location (hg19): chr10:11335760-11338633
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2874 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc001ikr_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.6213 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ECHDC3-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ECHDC3-6:1
4.0 lnc-ECHDC3-6:1
4.1 lnc-ECHDC3-6:1
5.0 lnc-ECHDC3-6:1
5.1 lnc-NPY4R2-395:1
5.2 lnc-ECHDC3-6:1