Transcript: lnc-ECI2-2:7

Basic information

LNCipedia transcript ID: lnc-ECI2-2:7 
LNCipedia gene ID: lnc-ECI2-2
Location (hg19): chr6:4345977-4347271
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011438; ENST00000437430; ENST00000437430.1; RP3-527G5.1-001; OTTHUMT00000039730.1; NONHSAT107402
Alternative gene names: XLOC_005589; linc-PECI-2; ENSG00000231811; RP3-527G5.1; ENSG00000231811.1; OTTHUMG00000014165.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.4892 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ECI2-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ECI2-2:7
3.1 lnc-ECI2-2:7
4.0 lnc-ECI2-2:7
4.1 lnc-ECI2-2:7
5.0 lnc-ECI2-2:7
5.1 lnc-ECI2-17:16
5.2 lnc-ECI2-2:7