Transcript: lnc-EDAR-5:2

Basic information

LNCipedia transcript ID: lnc-EDAR-5:2 
LNCipedia gene ID: lnc-EDAR-5
Location (hg19): chr2:108845682-108848661
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2347 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004375; NONHSAT073090
Alternative gene names: XLOC_002258; linc-ST6GAL2-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.2318 non-coding 
CPAT coding probability 21.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EDAR-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EDAR-2:2
3.1 lnc-EDAR-5:2
4.0 lnc-EDAR-5:2
4.1 lnc-EDAR-5:2
5.0 lnc-EDAR-5:2
5.1 lnc-AFF3-106:2
5.2 lnc-EDAR-5:2