Transcript: lnc-EEPD1-4:1

Basic information

LNCipedia transcript ID: lnc-EEPD1-4:1 
LNCipedia gene ID: lnc-EEPD1-4
Ensembl Gene ID: ENSG00000232930
Ensembl Transcript ID: ENST00000446024
Location (hg19): chr7:36069221-36095041
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012993; ENST00000446024; ENST00000446024.1; AC083864.3-001; OTTHUMT00000338296.1; NONHSAT120109
Alternative gene names: XLOC_006044; linc-EEPD1-2; ENSG00000232930; AC083864.3; ENSG00000232930.1; OTTHUMG00000155064.1; AC083864.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -294.8 non-coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EEPD1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC083864.4.1-2:1
3.1 lnc-AC083864.4.1-2:1
4.0 lnc-AC083864.4.1-2:1
4.1 lnc-AC083864.4.1-2:1
5.0 lnc-AC083864.4.1-2:1
5.1 lnc-CCDC129-47:1
5.2 lnc-EEPD1-4:1