Transcript: lnc-EFCAB8-1:1

Basic information

LNCipedia transcript ID: lnc-EFCAB8-1:1 
LNCipedia gene ID: lnc-EFCAB8-1
Location (hg19): chr20:31444848-31446557
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1710 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000569087.1; RP5-1085F17.3-001; OTTHUMT00000435465.1; NONHSAT079376
Alternative gene names: ENSG00000260257.1; RP5-1085F17.3; OTTHUMG00000177126.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.7265 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFCAB8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EFCAB8-1:1
4.0 lnc-EFCAB8-1:1
4.1 lnc-EFCAB8-1:1
5.0 lnc-EFCAB8-1:1
5.1 lnc-BPIFB2-2:4
5.2 lnc-EFCAB8-1:1