Transcript: lnc-EFEMP1-3:13

Basic information

LNCipedia transcript ID: lnc-EFEMP1-3:13 
LNCipedia gene ID: lnc-EFEMP1-3
Location (hg19): chr2:56400669-56412052
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3084 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233251.3|ENST00000596663.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.4049 non-coding 
CPAT coding probability 73.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EFEMP1-3:13 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-EFEMP1-3:13
5.0 lnc-EFEMP1-3:13
5.1 lnc-PPP4R3B-18:8
5.2 lnc-EFEMP1-3:13