Transcript: lnc-EFEMP1-3:7

Basic information

LNCipedia transcript ID: lnc-EFEMP1-3:7 
LNCipedia gene ID: lnc-EFEMP1-3
Location (hg19): chr2:56412410-56412913
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 504 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233251.3|HBMT00000805415.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -249.8238 non-coding 
CPAT coding probability 10.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFEMP1-3:7 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-EFEMP1-3:7
5.0 lnc-EFEMP1-3:7
5.1 lnc-PPP4R3B-18:5
5.2 lnc-EFEMP1-3:7