Transcript: lnc-EFNB2-3:1

Basic information

LNCipedia transcript ID: lnc-EFNB2-3:1 
LNCipedia gene ID: lnc-EFNB2-3
Location (hg19): chr13:106249802-106251893
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 689 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022102; NONHSAT035044
Alternative gene names: XLOC_010713; linc-SLC10A2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6186 non-coding 
CPAT coding probability 8.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFNB2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFNB2-3:1
3.1 lnc-EFNB2-3:1
4.0 lnc-EFNB2-3:1
4.1 lnc-EFNB2-3:1
5.0 lnc-EFNB2-3:1
5.1 lnc-IRS2-21:1
5.2 lnc-EFNB2-3:1