Transcript: lnc-EFR3A-4:1

Basic information

LNCipedia transcript ID: lnc-EFR3A-4:1 
LNCipedia gene ID: lnc-EFR3A-4
Ensembl Gene ID: ENSG00000253720
Ensembl Transcript ID: ENST00000520146
Location (hg19): chr8:130952102-130961640
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 549 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520146; ENST00000520146.1; RP11-473O4.3-001; OTTHUMT00000380595.1; NONHSAT129140
Alternative gene names: ENSG00000253720; RP11-473O4.3; ENSG00000253720.1; OTTHUMG00000164854.1; AC022973.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.142 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFR3A-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFR3A-3:1
3.1 lnc-EFR3A-4:1
4.0 lnc-EFR3A-4:1
4.1 lnc-EFR3A-4:1
5.0 lnc-EFR3A-4:1
5.1 lnc-MYC-27:1
5.2 lnc-EFR3A-4:1