Transcript: lnc-EFR3B-4:3

Basic information

LNCipedia transcript ID: lnc-EFR3B-4:3 
LNCipedia gene ID: lnc-EFR3B-4
Location (hg19): chr2:25643962-25663469
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 305 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224220.1|FTMT20700012007.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -47.4117 non-coding 
CPAT coding probability 1.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFR3B-4:3 yes no no no

Available literature

  1. Guo (2015), Comprehensive analysis of lncRNA-mRNA co-expression patterns identifies immune-associated lncRNA biomarkers in ovarian cancer malignant progression., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-EFR3B-4:3
5.0 lnc-EFR3B-4:3
5.1 lnc-SNX17-40:4
5.2 lnc-EFR3B-4:3