Transcript: lnc-EGLN1-1:7

Basic information

LNCipedia transcript ID: lnc-EGLN1-1:7 
LNCipedia gene ID: lnc-EGLN1-1
Ensembl Gene ID: ENSG00000233461
Ensembl Transcript ID: ENST00000440665
Location (hg19): chr1:231658207-231664001
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 416 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000757; ENST00000440665.1; RP11-295G20.2-003; OTTHUMT00000095273.1; NONHSAT010175; ENST00000440665.5
Alternative gene names: XLOC_001257; linc-EGLN1-2; ENSG00000233461.1; RP11-295G20.2; OTTHUMG00000039487.1; ENSG00000233461.5; AL445524.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.0724 non-coding 
CPAT coding probability 2.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EGLN1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EGLN1-1:7
3.1 lnc-EGLN1-1:7
4.0 lnc-EGLN1-1:7
4.1 lnc-EGLN1-1:7
5.0 lnc-EGLN1-1:7
5.1 lnc-EGLN1-1:7
5.2 lnc-EGLN1-1:7