Transcript: lnc-EIF2AK3-4:80

Basic information

LNCipedia transcript ID: lnc-EIF2AK3-4:80 
LNCipedia gene ID: lnc-EIF2AK3-4
Location (hg19): chr2:89117788-89124720
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000434790; ENST00000434790.1; AC096579.13-002; OTTHUMT00000323494.1; NONHSAT072221
Alternative gene names: ENSG00000240040; AC096579.13; ENSG00000240040.1; OTTHUMG00000151694.1; ENSG00000240040.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.8886 non-coding 
CPAT coding probability 5.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIF2AK3-4:80 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2AK3-2:2
3.1 lnc-EIF2AK3-3:2
4.0 lnc-AC110080.1-4:47
4.1 lnc-AC110080.1-4:47
5.0 lnc-AC110080.1-4:47
5.1 lnc-ZNF514-106:35
5.2 lnc-EIF2AK3-4:80