Transcript: lnc-EIF2B1-3:1

Basic information

LNCipedia transcript ID: lnc-EIF2B1-3:1 
LNCipedia gene ID: lnc-EIF2B1-3
Ensembl Gene ID: ENSG00000255839
Ensembl Transcript ID: ENST00000538837
Location (hg19): chr12:124192149-124192933
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 321 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538837; ENST00000538837.1; RP11-338K17.8-001; OTTHUMT00000400764.1; NONHSAT031602
Alternative gene names: ENSG00000255839; RP11-338K17.8; ENSG00000255839.1; OTTHUMG00000168722.1; AC117503.2; AC117503.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -385.7476 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIF2B1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2B1-3:1
3.1 lnc-EIF2B1-3:1
4.0 lnc-EIF2B1-3:1
4.1 lnc-EIF2B1-3:1
5.0 lnc-EIF2B1-3:1
5.1 lnc-CCDC92-8:2
5.2 lnc-EIF2B1-3:1