Transcript: lnc-EIF2S2-1:1

Basic information

LNCipedia transcript ID: lnc-EIF2S2-1:1 
LNCipedia gene ID: lnc-EIF2S2-1
Location (hg19): chr20:32602775-32605555
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 873 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000451556; ENST00000451556.1; RP5-1125A11.4-001; OTTHUMT00000078762.1; NONHSAT079421
Alternative gene names: ENSG00000228386; RP5-1125A11.4; ENSG00000228386.1; OTTHUMG00000032284.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.8804 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIF2S2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2S2-1:1
3.1 lnc-EIF2S2-1:1
4.0 lnc-EIF2S2-1:1
4.1 lnc-EIF2S2-1:1
5.0 lnc-EIF2S2-1:1
5.1 lnc-MMP24OS-28:1
5.2 lnc-EIF2S2-1:1