Transcript: lnc-ELF2-2:2

Basic information

LNCipedia transcript ID: lnc-ELF2-2:2 
LNCipedia gene ID: lnc-ELF2-2
Location (hg19): chr4:139925513-139933758
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 259 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008590; NONHSAT098447
Alternative gene names: XLOC_004096; linc-SLC7A11-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -245.0697 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ELF2-2:2 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ELF2-2:2
3.1 lnc-ELF2-2:2
4.0 lnc-ELF2-2:2
4.1 lnc-ELF2-2:2
5.0 lnc-ELF2-2:2
5.1 lnc-CLGN-28:2
5.2 lnc-ELF2-2:2