Transcript: lnc-ELFN1-1:4

Basic information

LNCipedia transcript ID: lnc-ELFN1-1:4 
LNCipedia gene ID: lnc-ELFN1-1
Ensembl Gene ID: ENSG00000231476
Ensembl Transcript ID: ENST00000421380
Location (hg19): chr7:1660290-1661041
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012940; ENST00000421380; ENST00000421380.1; AC074389.5-001; OTTHUMT00000322898.1; NONHSAT118758
Alternative gene names: XLOC_005965; linc-ELFN1; ENSG00000231476; AC074389.5; ENSG00000231476.1; OTTHUMG00000151498.1; AC074389.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.2256 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ELFN1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ELFN1-1:4
3.1 lnc-ELFN1-1:4
4.0 lnc-ELFN1-1:4
4.1 lnc-ELFN1-1:4
5.0 lnc-ELFN1-1:4
5.1 lnc-GPER1-28:8
5.2 lnc-ELFN1-1:4