Transcript: lnc-ELP4-12:2

Basic information

LNCipedia transcript ID: lnc-ELP4-12:2 
HGNC Gene Symbol: lnc-ELP4-12    
HGNC Full Gene Name: PAX6 upstream antisense RNA
Ensembl Gene ID: ENSG00000281880
Ensembl Transcript ID: ENST00000530146
Location (hg19): chr11:31907320-31939885
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1033 bp
Exons: 2
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530146.2
Alternative gene names: ENSG00000281880.2; PAUPAR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -22.6712 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ELP4-12:2 yes no no no

Available literature

  1. Pavlaki (2018), The long non-coding RNA <i>Paupar</i> promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis., EMBO J.
  2. Vance (2014), The long non-coding RNA Paupar regulates the expression of both local and distal genes., EMBO J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-QSER1-12:22
5.1 lnc-QSER1-68:2
5.2 lnc-ELP4-12:2