Transcript: lnc-EMC2-2:1

Basic information

LNCipedia transcript ID: lnc-EMC2-2:1 
LNCipedia gene ID: lnc-EMC2-2
Ensembl Gene ID: ENSG00000253949
Ensembl Transcript ID: ENST00000521504
Location (hg19): chr8:109593291-109638996
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 382 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521504; ENST00000521504.1; RP11-790J24.1-001; OTTHUMT00000380752.1; NONHSAT128279
Alternative gene names: ENSG00000253949; RP11-790J24.1; ENSG00000253949.1; OTTHUMG00000164880.1; AC022634.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.3593 non-coding 
CPAT coding probability 5.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMC2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC35-2:1
3.1 lnc-TTC35-2:1
4.0 lnc-TTC35-2:1
4.1 lnc-TTC35-2:1
5.0 lnc-TTC35-2:1
5.1 lnc-COLEC10-44:1
5.2 lnc-EMC2-2:1