Transcript: lnc-EMC2-4:1

Basic information

LNCipedia transcript ID: lnc-EMC2-4:1 
LNCipedia gene ID: lnc-EMC2-4
Ensembl Gene ID: ENSG00000253754
Ensembl Transcript ID: ENST00000520037
Location (hg19): chr8:109238429-109239773
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 447 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520037.1; RP11-35G22.1-001; OTTHUMT00000380676.1; NONHSAT128268
Alternative gene names: ENSG00000253754.1; RP11-35G22.1; OTTHUMG00000164866.1; AC087620.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.4974 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMC2-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TTC35-4:1
4.0 lnc-TTC35-4:1
4.1 lnc-TTC35-4:1
5.0 lnc-TTC35-4:1
5.1 lnc-COLEC10-51:1
5.2 lnc-EMC2-4:1