Transcript: lnc-EMP1-1:2

Basic information

LNCipedia transcript ID: lnc-EMP1-1:2 
LNCipedia gene ID: lnc-EMP1-1
Ensembl Gene ID: ENSG00000256306
Ensembl Transcript ID: ENST00000543347
Location (hg19): chr12:13683589-13700516
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 382 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543347; ENST00000543347.1; RP11-4N23.1-001; OTTHUMT00000400472.1; NONHSAT027044
Alternative gene names: ENSG00000256306; RP11-4N23.1; ENSG00000256306.1; OTTHUMG00000168642.1; AC007527.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.1902 non-coding 
CPAT coding probability 5.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMP1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EMP1-1:2
3.1 lnc-EMP1-1:2
4.0 lnc-EMP1-1:2
4.1 lnc-EMP1-1:2
5.0 lnc-EMP1-1:2
5.1 lnc-BCL2L14-40:2
5.2 lnc-EMP1-1:2