Transcript: lnc-EMP3-1:4

Basic information

LNCipedia transcript ID: lnc-EMP3-1:4 
LNCipedia gene ID: lnc-EMP3-1
Location (hg19): chr19:48824742-48826469
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 916 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027067; NONHSAT067063
Alternative gene names: XLOC_013108; linc-EMP3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.9348 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMP3-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EMP3-1:4
3.1 lnc-EMP3-1:4
4.0 lnc-EMP3-1:4
4.1 lnc-EMP3-1:4
5.0 lnc-EMP3-1:4
5.1 lnc-EMP3-1:4
5.2 lnc-EMP3-1:4