Transcript: lnc-ENPP1-3:2

Basic information

LNCipedia transcript ID: lnc-ENPP1-3:2 
LNCipedia gene ID: lnc-ENPP1-3
Ensembl Gene ID: ENSG00000236166
Ensembl Transcript ID: ENST00000440246
Location (hg19): chr6:132411673-132420366
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 490 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011371; ENST00000440246; ENST00000440246.1; RP3-523C21.2-001; OTTHUMT00000125834.1; NONHSAT114939
Alternative gene names: XLOC_005464; linc-TAAR9-2; ENSG00000236166; RP3-523C21.2; ENSG00000236166.1; OTTHUMG00000055852.2; AL021408.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.7831 non-coding 
CPAT coding probability 8.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ENPP1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ENPP1-2:2
3.1 lnc-ENPP1-3:2
4.0 lnc-ENPP1-3:2
4.1 lnc-ENPP1-3:2
5.0 lnc-ENPP1-3:2
5.1 lnc-TBPL1-39:7
5.2 lnc-ENPP1-3:2